webknossos-libs

webknossos-libs copied to clipboard

Bumps [joblib](https://github.com/joblib/joblib) from 1.1.0 to 1.2.0. Changelog Sourced from joblib's changelog. Release 1.2.0 Fix a security issue where eval(pre_dispatch) could potentially run arbitrary code. Now only basic numerics are supported....

dependabot[bot]

Bumps [oauthlib](https://github.com/oauthlib/oauthlib) from 3.2.0 to 3.2.1. Release notes Sourced from oauthlib's releases. 3.2.1 In short OAuth2.0 Provider: #803 : Metadata endpoint support of non-HTTPS CVE-2022-36087 OAuth1.0: #818 : Allow IPv6...

dependabot[bot]

Bumps [kubernetes](https://github.com/kubernetes-client/python) from 23.3.0 to 25.3.0. Release notes Sourced from kubernetes's releases. Kubernetes Python Client v25.3.0 Stable Release Getting started: pip install --pre --upgrade kubernetes Or from source, download attached...

dependabot[bot]

Bumps [oauthlib](https://github.com/oauthlib/oauthlib) from 3.2.0 to 3.2.1. Release notes Sourced from oauthlib's releases. 3.2.1 In short OAuth2.0 Provider: #803 : Metadata endpoint support of non-HTTPS CVE-2022-36087 OAuth1.0: #818 : Allow IPv6...

dependabot[bot]

Bumps [mypy](https://github.com/python/mypy) from 0.910 to 0.971. Commits 1f08cf4 Update version to 0.971 61c0064 Add back workaround to avoid confusing mypy.types and types in pyinfo (#13176) d8d900c Update version to 0.971+dev...

dependabot[bot]

Bumps [pylint](https://github.com/PyCQA/pylint) from 2.12.2 to 2.13.9. Changelog Sourced from pylint's changelog. What's New in Pylint 2.13.9? Release date: 2022-05-13 Respect ignore configuration options with --recursive=y. Closes #6471 Fix false positives...

dependabot[bot]

Bumps [black](https://github.com/psf/black) from 21.12b0 to 22.8.0. Release notes Sourced from black's releases. 22.8.0 Highlights Python 3.11 is now supported, except for blackd as aiohttp does not support 3.11 as of...

dependabot[bot]

## Detailed Description `Dataset.from_images()` and `ds.add_layer_from_images()` could need more love in the docs: The api docs have [super-long signature descriptions](https://docs.webknossos.org/api/webknossos/dataset/dataset.html#Dataset.from_images) which could be improved, and they should be added in...

jstriebel

Add python-native conversion for czi, dm3 and dm4 in from_images

1

## Detailed Description Affected library: webknossos To be en-par with wkcuber, the from_images routines in the webknossos images should also be able to convert czi, dm3 and dm4 only with...

jstriebel

Add test for DICOM in Dataset.from_images

1

Many medical datasets come in the standard DICOM format. We are already using `nibabel` for NIFTI files. They claim limited support for DICOM. Further reading: - [nibabel](https://nipy.org/nibabel/) - [pydicom](https://pydicom.github.io/pydicom/stable/getting_started.html) -...

hotzenklotz