webknossos-libs

webknossos-libs copied to clipboard

## Detailed Description Similar to `Dataset.get_remote_datasets`, we should have a similar function that lists all annotations. The function should probably default to annotations of the logged in user, but should...

normanrz

## Detailed Description - Affected library: webknossos We need to add tests for NDBoundingBox class. While there are some Tests for BoundingBoxes the NDBoundingBoxes are not tested yet.

markbader

## Context - Affected library: cluster-tools - If there is an error during slurm job submission, for example if sbatch complains that the job submission script is invalid, the resulting...

daniel-wer

Access Metadata of Segments & Trees in Annotations

4

https://github.com/scalableminds/webknossos/pull/7875 introduces metadata for segments and trees and extends the NML format to include it. The libs should allow accessing it. We should discuss what the interface should look like.

fm3

## Detailed Description - a dataset layer should have a function like `transform(coordinate_mapping, inverse_coordinate_mapping, output_layer, roi_bbox)` which allows to specify a transformation as a lambda which maps coordinates from one...

Tobias314

## Context - Affected library: webknossos When accessing a Layer or a Mag with `Layer._ensure_layer()` or `MagView._ensure_mag()` the `Dataset.open()` method is always used. Even if the given path is a...

markbader

## Detailed Description - Affected library: e.g. webknossos The current version of the `add_mag_for_existing_files` method of the layer class does not seem to support nd data. To increase the nd...

MichaelBuessemeyer