webknossos-libs

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https://github.com/scalableminds/webknossos/pull/6834 introduced a new partial update api for datasets. This should be used by the libs when editing remote datasets (assigning folders, adding tags)

fm3

Support NRRD files

2

compare http://teem.sourceforge.net/nrrd/format.html https://pypi.org/project/pynrrd/

fm3

Dataset.from_images does not take large compressed images, citing „decompression bomb DOS“

2

Tried to convert jpg files, got `DecompressionBombError: Image size (352268961 pixels) exceeds limit of 178956970 pixels, could be decompression bomb DOS attack.` Is there a way to raise that limit?...

fm3

I tried to use Layer.upsample(). The bbox in the input dataset datasource-properties.json was not mag-aligned with the `from_mag`. I I got ``` File "wkcuber/wkcuber/upsampling.py", line 144, in upsample_mags( File "wkcuber/wkcuber/upsampling.py",...

fm3

## Context - Affected library: webknossos ## Expected Behavior Dataset.from_images with a 3-channel `uint16` should produce a Dataset with 3 `uint16` layers. ## Current Behavior Dataset.from_images with a 3-channel `uint16`...

normanrz

If annotations don't have enough slices...

7

Dear ScalableMinds, I have been attempting to download my annotations as a segmentation mask from our server's WK instance. And I believe I have run into an issue that I...

azatian

## Detailed Description - Affected library: webknossos When adding a new mag / adding data to a layer, we should assert that the data's dtype is actually supported by WEBKNOSSOS...

hotzenklotz

pin compatible numpy version // crash in wkcuber with Python 3.8

2

Ubuntu 20.04 WSL, fresh environment ``` (env) boergens@DESKTOP-4L0H931:~/wkcuber$ python -m wkcuber --scale 11.24,11.24,25 /mnt/c/Users/Kevin/Desktop/sample_40_prescan_488-1.tif asdf Traceback (most recent call last): File "/usr/lib/python3.8/runpy.py", line 194, in _run_module_as_main return _run_code(code, main_globals, None,...

boergens

The following points are follow-ups from #858: * [ ] Adapt `map` and `map_to_futures` signatures to fit the parent classes. This might include breaking changes. * [ ] Add stricter...

jstriebel

Bumps [ruff](https://github.com/astral-sh/ruff) from 0.4.0 to 0.4.4. Release notes Sourced from ruff's releases. v0.4.4 Changes Preview features [pycodestyle] Ignore end-of-line comments when determining blank line rules (#11342) [pylint] Detect pathlib.Path.open calls...

dependabot[bot]