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Workflows and interfaces for neuroimaging packages
This is a snippet from running the tests (full build log [here](https://ppb.chymera.eu/61c078.log)): ``` ______________________________________ ERROR collecting nipype/interfaces/nitime/tests/test_nitime.py ______________________________________ ImportError while importing test module '/var/tmp/portage/sci-libs/nipype-1.8.6/work/nipype-1.8.6/nipype/interfaces/nitime/tests/test_nitime.py'. Hint: make sure your test modules/packages...
Hi, I made a PR (https://github.com/nipy/nipype/pull/3611) in October but I forgot to make an issue and to add information to help to close the issue ! So here are the...
Summary When I used dcm2niix to convert the format, the orientation of the output file was LR PA IS (x y z), which is obviously not a normal file because...
### Summary Nipype does not set all inputs of a Function Node if this node was used previously ### Actual behavior The function Node has two inputs (Graph correctly shows...
Hello, I am a beginner, and I would like to perform a 2x3 mixed-design ANOVA using nipype's SPM interface. I noticed that in nipype.interfaces.spm, there are interfaces **OneSampleTTestDesign, TwoSampleTTestDesign, PairedTTestDesign,...
### Summary Originally observed by @dnkennedy while running `heudiconv` on what appears to be incomplete series. then reproduced on some shorter case of 3 slices dicoms picked up from 10k...
Hello experts, I've faced this error "TraitError: Each element of the 'in_files' trait of a SmoothInputSpec instance must be a pathlike object or string representing an existing file, but a...
### Summary When a workflow is completed, it would be helpful to have the workflow save its status (success, failed, success with errors etc...) ### Actual behavior Workflow run doesnt...
### Summary The mrtrix3 interface is missing some relevant functions. I will draft a pull request to add the following functions to mrtrix3.interfaces.utils: 1. maskfilter 2. mtnormalise 3. 5tt2gmwmi
If several arguments are used (for example invert and linear_transform) they are not all take into account (and so it is not the same behavior as the native mrtrix3 command)....