FEAT/filmGLS through nipype not working

[hassan-bassam]

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Summary

Hi, I’ve been setting up a fairly straightforward 1st level analysis pipeline for my fmriprepped data, but struggling a lot now with an error that I can’t figure out. I tried running live on the server through a jupyter notebook or sbatching with no difference. I tried running the FilmGLS code on its own in the terminal and that did work (albeit very slowly, I’m not sure if that’s usual), so I think it’s rather an issue with nipype

Actual behavior

FilmGLS (and FEAT overall) works through nipype

Expected behavior

Only works when called directly and not through nipype

How to replicate the behavior

Hard to say? I'm not sure there's anything strange about my code or data, it came direct from fmriprep and everything worked fine there.

Script/Workflow details

https://pastebin.com/d62zzd6z is the output

https://colab.research.google.com/drive/1MsQkl4udANFnuJg3-1gNC1cUyUosk5z9?usp=sharing is a copy of the notebook and workflow etc

Platform details:

{'commit_hash': '72945ef34',
 'commit_source': 'installation',
 'networkx_version': '2.5',
 'nibabel_version': '3.2.1',
 'nipype_version': '1.5.0',
 'numpy_version': '1.20.1',
 'pkg_path': '/home/users/hassan.bassam/anaconda3/envs/mcn/lib/python3.7/site-packages/nipype',
 'scipy_version': '1.6.1',
 'sys_executable': '/home/users/hassan.bassam/anaconda3/envs/mcn/bin/python',
 'sys_platform': 'linux',
 'sys_version': '3.7.6 | packaged by conda-forge | (default, Jun  1 2020, '
                '18:57:50) \n'
                '[GCC 7.5.0]',
 'traits_version': '6.2.0'}

Execution environment

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