Devon Ryan

@chhylp123 No, I've never used psascan directly before, I was just modifying the bitmapperBS code to debug the cause of the segfault my colleage was running into and noticed that...

Mostly the decoy generation. I guess you have it mostly integrated into salmon 1.0 now, so perhaps it's not as needed as I thought (I do like having the separate...

Nice :)

Hmm, looks like that's incorrectly opening in a new window, thanks for reporting that! The good news is that you're actually logged out of the old window, but you're correct...

Am I correct in assuming that the capture step with the small pools is performed after library prepartion is complete (i.e., barcodes have been added)? I think the easiest implementation...

nginx is listening on port 443 by default, so you should be able to go to https://you_ip

Sorry about that, I have a PR on bioconda now that should fix things. I'll merge it once I'm in the office tomorrow.

My PR is now merged and a new version should be available in bioconda in a few hours. If it's still not working correctly then please let me know.

I think the new datatype [ship has already sailed](https://github.com/galaxyproject/tools-iuc/blob/master/tool_collections/samtools/samtools_sort/samtools_sort.xml#L22), though that would be a nice orthogonal change.

Your expected behavior is exactly what MethylDackel is doing with `--keepSingleton`. For reference, the actual code for this is here: https://github.com/dpryan79/MethylDackel/blob/3c77bda12141e99d80234d416e668a90ec70b3f7/common.c#L429