Devon Ryan
Devon Ryan
The wheels for this should now resolve this issue. If not, let me know.
In my case it seems like in some (but not all) cases the malloc and strncpy_s in the `exe_path` function are returning errors. If I just use the full path...
Do you really need to run GC bias correction? This generally hasn't been needed in many years and this GC bias tools are deprecated.
I don't remember there being any intermediate files. Do you see it actually running with `top`?
You would just run the standard `make test`, which will also build the test executables and run them.
This can partially be solved by using a more recent seqan, but that results in a couple failed unit tests: https://circleci.com/gh/bioconda/bioconda-recipes/69713 See https://github.com/bioconda/bioconda-recipes/pull/16212 for an example. I'm not sure about...
One of our users is also now running into this. @bgruening do you recall if increasing `-max_file_sz` fixed this? I'm trying 10GB now, but this isn't exactly a quick process....
It looks like setting `-max_file_sz` >2GB is either ignored or otherwise capped at 2GB. Either way, going up to 100GB still produces this error on the dataset in question here....
Final update from me: this still happens in 2.6.0+. It looks like whenever the .nhr file is huge and causes multiple files to be written and the need for a...
It'll need to keep those results in memory to output them. I wonder what the utility of such a large bigBed file is, since I suspect you'd be better served...