Devon Ryan

For recipes with cython, have a look at macs2. The basic idea is that you need the following in the recipe: requirements: build: - {{ compiler('c') }} host: - python...

Yeah, we either need to use ; or parentheses. This sounds like a good hackathon project for someone :)

How did you install bioconda-utils? This should normally only happen if you install it from source rather than via conda.

Excellent, we need to deprecate the boostrap.py and clarify this in the documentation. The version number code stuff is actually intentional, since I think we're using it to test the...

The channel order is correct. We want to prioritize conda-forge so dependencies built there take priority over older versions that used to be supplied via bioconda :)

@mbargull This is presumably a gitpython bug, do you happen to know if we need to keep our current pinning to >=3.0.8,3.0.* for any reason and not allow 3.1?

Try making a new environment instead. I also recommend removing `r` from your channels (or at least put it below `bioconda`). Likewise with `ursky`. That's especially true with strict channel...

The difficulty is that it's not a traditional lint, but an error thrown by yaml.load(). Maybe we can read in the yaml and pass it through jinja2 before then giving...

@johanneskoester See https://github.com/bioconda/bioconda-utils/pull/605, which at least works for the vmatch recipe that caused me to raise the original issue.

This is caused by lines like ` - something # [ this is a selector]`. I need to review the code more to determine exactly why no replacement was done...