Devon Ryan

Can we use `r-wasabi` instead? That one depends on a bioconductor package, so it won't ever get transitioned to conda-forge. @bgruening: Should we mention the helper script in the documentation...

I create an "Agenda" issue :)

Am I interpreting this correctly in that you'd propose forbidding using `git`/`wget`/`curl` in `build.sh`?

I think we're just going to ignore that the GPL requires this.

I wonder if their site is down.

What version of Galaxy are you using?

I suspect you need a more recent version. Many of the package_python_2_7\* packages from the IUC need that. I recently updated our public Galaxy instance for that reason. Sent from...

Does psascan need to be in the working directory, in the same directory that BitMapperBS is in, or just somewhere in your PATH? I have a colleague who also just...

Ah, I see, either in the working directory or somewhere in your $PATH should work: https://github.com/chhylp123/BitMapperBS/blob/d0fb1ea7b7ecc92b8182068b2f096c33d20c7d68/bwt.cpp#L1031-L1042 You might change `psascan not found` to `psascan not found in your working directory,...

@chhylp123 Thanks. For whatever it's worth the issue seems to be that the file given to psascan is binary rather than text, causing it to segfault.