Zach Norgaard
Zach Norgaard
Depends on #167 merge. - [ ] Add support for variable penalties to levenshtein, see [fulcrumgenomics/commons](https://github.com/fulcrumgenomics/commons/blob/9372c5585084a1d7486c1b6036d0e06824b2c8d4/src/main/scala/com/fulcrumgenomics/commons/util/StringUtil.scala#L57) for inspiration - [ ] Add support for Damerau Levenshtein distance (allow swaps)
I encountered a minor annoyance with the existing instructions for using multiple deploy keys in a docker build. If you use the instructions as presented, local builds will fail. This...
I'm working on a project with 1M+ sequences that need to be compared to a reference sequence. Even using Iterators and streaming as much as possible, the memory usage continues...
> [!NOTE] > The failing tests on this PR are only occurring with nextflow=24.10.2 for a single stub test and are due to a known nextflow bug, https://github.com/nextflow-io/nextflow/issues/5456 The `cnvkit/batch`...
### Have you checked the docs? - [x] [nf-core website: troubleshooting](https://nf-co.re/usage/troubleshooting) - [x] [nf-core modules documentation](https://nf-co.re/docs/contributing/modules) ### Description of the bug `picard CollectHsMetrics` requires a `.gzi` file when running on...
I want to extract UMIs at the speed of rust, but I don't want to make a metadata file. See [FastqToBam](https://fulcrumgenomics.github.io/fgbio/tools/latest/FastqToBam.html). ```console fqtk extract --inputs r1.fq r2.fq --read-structures 5M5S+T +T...