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Add a single sample extract tool

Open znorgaard opened this issue 2 months ago • 0 comments

I want to extract UMIs at the speed of rust, but I don't want to make a metadata file. See FastqToBam.

fqtk extract --inputs r1.fq r2.fq --read-structures 5M5S+T +T

Ideally, I want an option to output as an unmapped BAM, but would settle for FASTQ files as V1.

znorgaard avatar Nov 10 '25 22:11 znorgaard