rvtests
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zhanxw
Rare variant test software for next generation sequencing data
Eigen's library repository migrated from bitbucket to gitlab. http://eigen.tuxfamily.org/index.php?title=News:Eigen_is_now_on_GitLab.com
Hi! I'm interested in rare-variant test, such as burden test, SKAT, SKATO and so on. As I used SKAT test in Rvtest and R SKAT package, The results of p-value...
The current logger outputs FLAG_siteDepthMin instead of FLAG_siteMACMin. Then, I fixed this typo.
Hi, I'm not sure whether this is something to fix or something to just clarify explicitly in the documentation, but I discovered an issue while running rvtests using a space-delimited...
Hi, I had encountered a problem of "-nan" in pvalue while running the SKAT for gene-based association. For the same gene, the burden test and single variant analysis were properly...
The documentation seems to say BCF files are supported but I cannot find the command to input bcf.
I am presently trying to install the latest version on our servers and the make is falling over OS: Opensuse 42.3 here is the error output : [Makefail.txt](https://github.com/zhanxw/rvtests/files/4261145/Makefail.txt)
Dear colleague, Your wiki (http://zhanxw.github.io/rvtests/#genotype-files-vcf-bcf-bgen-kgg) mentions the use of "plink files" as a potential input bar vcf. I cannot find any further info on this. Is this correct? Many thanks
Attempting to analyse haploid chomosome Y SNPs seems to have resulted in an additional copy of the reference allele being added on to each genotype in order to ensure the...
Hi! I recently started working with rvtest and am getting an error message related to the kinship matrix when attempting to run GWA. I have created a kinship matrix (called...
