zhangrengang

Similarly, `kmc_tools transform k_31 dump -s k_31.dump` does not work but `kmc_tools transform k_31 dump k_31.dump` works.

My command is `kmc -m58 -t60 -k31 -ci4 -cs1000000 -fq @test.list test_31 test_31 > test_31.stats && kmc_tools transform test_31 sort test_31.sorted`. The files are too large for GitHub. Could you...

Hi, I have sent the files to your email. I have test `kmc` with `-t1` and `-t4`, but it does not work.

I find the size of dataset also has an effect by changing the option `-ci`: `-ci5`: `in1: 1%` `-ci6`: `in1: 3%` `-ci7`: `in1: 4%` `-ci8`: `in1: 6%` `-ci9`: `in1: 100%`...

Yes, it works! Thank you. It is resolved for me.

It is an issue of interactive backend of matplotlib. Can you find and edit the file `~/.conda/envs/SubPhaser/lib/python3.8/site-packages/matplotlib/mpl-data/matplotlibrc` , with setting `backend : agg`? `agg` is s a non-interactive backend.

Hi @2eYu No, TEsorter cannot classify TIR into clade-level. It is because there are no curated clade-level classifications for TIR and all other non-LTR elements, to my knowledge. If you...