zhangrengang

The error is not expected. I have revised the funtion to make the float type compitable. Please try the last verion in github. By the way, which version of hmmer...

@LeeYEAH2 I have updates the code. You can have a try. It should be beacause some Insertion_Time by LTR_retriever are "NA".

@LeeYEAH2 please wait a moment. It is pushing.

@LeeYEAH2 now is ok.

Hi @wensulin93 , I have no good idea, but suggest you to de novo squence the genome of your rhododendron. The closely related rhododendron genome should share many ancient (maybe...

@wensulin93 您好。可以加这个微信：bio_ture。是我们的深度合作者，合作发表过两三篇杜鹃花基因组。

Hi @2eYu. Please refer to https://github.com/zhangrengang/TEsorter/issues/34 (the last comment). `RunCmdsMP.py` is in `~/miniconda3/envs/TEsorter/lib/python*/site-packages/TEsorter*/TEsorter/modules/`, but is not found from `PYTHONPATH`. You can link it into `PYTHONPATH` or `~/miniconda3/envs/TEsorter/bin/`. It should work.

No. It may be very easy to know the homology by aligning your chromosomes to the genome of Fragaria vesca using tools such as minimap2 etc. You may be able...

Another way for you, the HiC contact heatmap can also show diagonal signals between homeologous chromosomes like:  So the sg.config configuration can be set like: ``` chr01a chr01b chr01c...

Do not use hardmasked genome sequences, because subphaser is based on repeated sequences (TEs in most cases) in fact.