zhangrengang
zhangrengang
The pre-compiled augustus (http://bioinf.uni-greifswald.de/augustus/binaries/augustus-3.4.0.tar.gz) raises error： ``` ./augustus: /lib64/libm.so.6: version `GLIBC_2.29' not found (required by ./augustus) ./augustus: /lib64/libc.so.6: version `GLIBC_2.14' not found (required by ./augustus) ./augustus: /lib64/libstdc++.so.6: version `GLIBCXX_3.4.26' not...
Here is an example:  The coverage depths of A, B, B' and C are even, so the structure is expected to be A-B-B'-C or A-B'-B-C where B and B'...
The below is an example: the two chromosome-level haplotypes are continuous on the unitig graph, but in the final `hic.p_ctg`, one unitig (charactered as “A”) is breaked.  The black...
My allotetraploid genome has a few homeologous regions that are derived from the same diploid ancestral species (unbalanced homeologous exchanges). In the final primary assemblies (p_ctg, hap1.p_ctg and hap2.p_ctg), some...
The below is a unitig graph: the unitigs A and B is allelic (confirmed by aligning to reference). After HiC phasing, unitig A is in hic.hap2.p_ctg, but unitig B is...
**Describe the bug** I start to update juicebox from 1.11 to 2.16. The newer version is much faster; it is great. The *.hic + *.assembly generated by 3d-dna can be...
For large genome, I find that: ``` > queryLenAgg = tapply(alignments$lenAln, alignments$queryID, sum) There were 12 warnings (use warnings() to see them) > warnings() Warning messages: 1: In FUN(X[[i]], ...)...
Hi, I have run CAFE 4.0.2 and get the following error: ----------------------------------------------------------- Family information: species.ogcount.txt Log: log-run2.txt The number of families is 37995 Root Family size : 1 ~ 2399...
ftp遇到这个问题一般是传输模式（文本/二进制）的问题，文件大小没问题，文件内容有损坏。pcs也遇到这个问题，很多gzip压缩文件都出现这个错误，多试几次或许能下对，还有其他办法吗？
Hi, I have two nodes in a cluster. In one node, running `kmc_tools` will be completed in a few minutes. But in the other node, running `kmc_tools` will be always...