zhangrengang

Does `${NEW_PATH}/lib/python3.9/site-packages/` contain `*.pth` files like `easy-install.pth`? Normally, `TEsorter-1.4.6-py3.9.egg/` should be in the `pth` file.

How much is the RAM of your computer?

How about the peak memory? Surely the large genome require large memory, but I can run the wheat genome (14Gb, 140M kmers, 21 chromosomes) with 1Tb RAM. If it actually...

In general 1-2 days is needed for the large genome.

Are you using SLURM which limits Memory according to Processes?

It is strange. You may try to reduce the `-cpu` set to 1 to see the memory cost.

The error is because there are too few differential kmers (only four). But it is not the time to say it is an autohexaploid. You may set `-nsg 3` and...

Yes, it looks like an autohexaploid. You may generate a kmer histogram and Smudgeplot (https://github.com/KamilSJaron/smudgeplot) for cross-valiadation. The plots can be generated from whole-genome HiFi reads. Introgression is hard to...

Ok, I will fix it for compatibility. Thank you.

Yes. In the output library `*.cls.lib`, the sequences are identical to the input, but their ID have been updated with new classifications.