zarp
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zavolanlab
The Zavolab Automated RNA-seq Pipeline
**Is your feature request related to a problem? Please describe.** Currently, there is no documentation that describes the invidiual outputs that ZARP generates and how users can explore them and...
@uniqueg and @mkatsanto have access to the responses in the form. People might sign up there for * contributing to zarp * beta-testing * being notified upon official release of...
**Is your feature request related to a problem? Please describe.** Enable automated triggering of zarp run on defined set of input data. Include analysis script that aggregates all the results....
**Describe the bug** The CHANGELOG.md is not working properly in this workflow. The issue is that this action is adding the history of commits to the CHANGELOG.md and then pushes...
**Is your feature request related to a problem? Please describe.** Can we provide a way to store the ZARP workflow and its results together with the metadata of the corresponding...
**Is your feature request related to a problem? Please describe.** Move function definitions from top of Snakefile to separate module **Describe the solution you'd like** Move function definitions from top...
**Is your feature request related to a problem? Please describe.** > @uniqueg : CRAM uses considerably less space and is faster for most tasks than BAM. Explore whether all tools...
**Is your feature request related to a problem? Please describe.** > @fgypas : Since snakemake has cloud execution capabilities, we can relatively easily support such environments (e.g. kubernetes). Do we...
**Is your feature request related to a problem? Please describe.** Remove PCR duplicates with a third-party tool. **Describe the solution you'd like** Suggestions from the old discussion > - https://umi-tools.readthedocs.io/en/latest/:...
**Is your feature request related to a problem? Please describe.** Currently, ZARP has only been tested with/only works with ensembl style GTF files. In order to use GTF files from...