Yunfei Guo

this needs further investigation and testing.

Hi @Pitithat-pu Right now it does not support single-end read. One simple workaround is generate paired-end reads, but only use first or second read in a pair. FYI @marghoob

Hi @Chandralinjo this is a known issue in varsim. We will work on it. Thanks!

Hi, this issue affects both current and previous versions. Thanks.

Hi @jayaramanp looks like `ART` failed. In the log folder, you should find logs for `ART`: `art.lane*.err` or `art.lane*.out`, could you post the contents of these files? You can also...

Hi please use `--vcfs` to supply VCF files. `--sv_dgv` only accepts the DGV format.

Hi @thomas-davis what was the command used? And could you provide the input file to RandDGV2VCF as well (just enough for us to reproduce the error)?

Thanks, @thomas-davis, we'll look into this.

Hi @thomas-davis if varsim works with dgv without any error, then this should work. Read simulation should be fine anyway. Alternatively you can supply a VCF containing structural variants (SV)...

Hi @thomas-davis actually I noticed that the reference genome does not match the database (dgv doesn't have `chr` prefix for chromosome names but hg19 has it). Could you please try...