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Published 20 hours ago • verified publisher icon bioinform

Simulate Single-end reads

Open Pitithat-pu opened this issue 6 years ago • 1 comments

Hi Developers, How to set the Varsim parameters to simulate a single-end file of shallow whole-genome sequencing (0.5x) given mean fragment size of 167 bp? Best Pitithat

Pitithat-pu avatar Mar 14 '18 15:03 Pitithat-pu

Hi @Pitithat-pu Right now it does not support single-end read. One simple workaround is generate paired-end reads, but only use first or second read in a pair. FYI @marghoob

yunfeiguo avatar Mar 14 '18 21:03 yunfeiguo