Yang Cao

@fconstancias @marcinschmidt Thanks for your interested in microbiomeMarker. Could you provide your reproducible examples? Thanks.

> Hi @yiluheihei @fconstancias, I got results for my phyloseq using `run_lefse()` and `run_ancombc()` , and for `run_aldex()` as well. For the two first mentioned methods result the `plot_ef_bar()` gives...

Thanks for your suggestion. Any other feedback will be appreciated.

@madbullahi Could your provide a reproducible example?

@DrYoungOG A reproducible example is very useful to solve your question.

@jodjo86 Thanks for your feedback. Can you provide you example?

Thanks for your interested in microbiomeMarker. metaphlan2 outputs were not supported. If necessary. a new function (e.g. `import_metaphlan2()`) may be created in microbiomeMarker.

@fconstancias Thanks for your question. Argument `confounders` is used to specify the confouding variables. e.g. ``` run_ancom(ps, group = "Enterotype", confounders = "Gender") ```

> Hi @yiluheihei, > > Thanks for your answer. From the [ANCOM package](https://github.com/FrederickHuangLin/ANCOM-Code-Archive) the approach can handle both: > > * `adj_formula: Character string representing the formula for adjustment (see...

Thanks for your interested in microbiomeMarker. Maybe `clade_label_font_size` should upport a vector to set the font size of clade label seperately, or if it is a constant all the clade...