Quanyu Chen

icon indicating a website link https://scholar.google.com/citations?user=IiiuVgIAAAAJ&hl=en icon indicating an email [email protected]

icon company Zhejiang University icon location Hangzhou, China icon location Senior undergraduate at College of Life Science, Zhejiang University.

Results 35 comments of Quanyu Chen

Problems with running Liftoff on HPC environment

I also encountered this problem, have you solved it?

r-base 3.4.3** is uninstallable because it conflicts with any installable versions previously reported.

I have also encountered this error, have you solved it?

racon: invalid option -- 'L'

> I encountered the same situation，have you solved it ? I didn't solve it and tried another method.

KMC yields an error on fixed width fasta files

I also encountered this problem and after using -fm it's cool to get the right result

Doesn't GraphAligner support `.vg` graph?

@maickrau hi, have you solved this problem? I also met this issue

GAM surject incompatible with VG

Hi, I also met this issue, have you solved it?

issues for specific region

1. Yeah, in the newest version of GCI (v0.4), I added the function to generate GCI scores for each specific region. 2. As GCI is a tool for assesing genome...

issues for specific region

Yeah that's a good suggestion. Now in the latest commit, I created a file named `GCI_score.py` in the folder `utility`, which can be used to compute GCI score as in...

issues for specific region

I will close this issue due to long time of inactivity.

dealing with pacbiohifi

Thanks for trying this tool! I'm sorry for that I haven't met this issue before... Could you check the version of pysam, it seems the version you are using is...