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Published 20 hours ago • verified publisher icon yeeus

issues for specific region

Open ssssyq1123 opened this issue 11 months ago • 3 comments

Cool tool! I’m interested in specific regions, but I’m running into some issues with GCI.

  1. Is it possible to generate a continuity index for a specific region?
  2. When I plot the depth of a specific region, it also generates whole genome figures, which takes a long time. It doesn’t seem necessary, though.
  3. It’d be awesome to add some logging since the tool needs a lot of memory. I keep hitting an ‘out of memory’ error in the first few runs, but I can’t check if the depth file has been generated. If you’ve got a log file, could you please check the last log entry so I can keep the GCI running?

ssssyq1123 avatar Mar 14 '24 06:03 ssssyq1123