Anurag Priyam

@yannickwurm Maybe dot-plot is redundant with Kablammo? /cc @vivekiitkgp

Makes sense; +1.

How about grouping database settings in `config.yml`, something like: ``` yaml database: path: ~/db_path group_by: /(transcript)|(cDNA)/, /genome/ #this can be a string or a regexp ```

Apart from the ideas above, there's this other one I had in mind and have experimented with a bit. If files under database dir are organised as: ``` |- genome/...

The data the results page receives from the server is hierarchical: query -> hit -> hsp. hit details are not available in hsp object. But what you want to do...

Correction: see how alignment exporter is called in hit.js, sidebar.js, etc.

Given the number of 'Update xyz' kind of commits, it may be desirable to squash-and-merge this PR. That would be `git merge --squash` on the command line, but also GitHub...

To minimize security risks, not interpreting any unknown HTML is the right thing to do by default. Any HTML snippet not already defined in the software's source code is unknown...

I see the utility of it. Currently, adding custom links requires a bit of Ruby. But with embedded markdown, users can add them to the FASTA files using Perl, Python,...

Installing geckodriver is definitely an option. All capybara tests require geckodriver, so I am not sure how useful tags approach is, and we are only talking capybara tests here.