Anurag Priyam

docker-machine doesn't seem to solve this. Not automagically.

No, it's zsh. `.zcompdump` is used by zsh completion system to speed up completion. It's safe to delete them, but they will be recreated unless you add `-D` to `compinit`...

Hard already in the current approach. Clueless how "switch within switch" can be done after #12. I'm considering the name 'con' (which could mean container, or just 'con' :P).

@bmpvieira Can this or any other docker-extension scheme make oswitch work in Kitematic? Like, you pull an image in Kitematic and it gets run through oswitch?

It's going to be a highly contrived solution, if at all possible. Your shell starts switch (which is a Ruby process). Switch `exec`s `docker run`. `exec` overwrites the current process...

Not sure if the error is coming from GNU parallel or blat. The contents of `run/joblog.blat` can help decide. Would you mind posting it? If it's GNU parallel, you could...

> if installed new one in different folder, I then need to point all the parallel in flo to the new src Best to install in new folder. You can...

Sorry, I am not quite sure what is happening here. I have not encountered this error before. From the information we have in this thread, it might as well be...

I am not sure. How big is the target genome? How many sequences do you have in the target assembly? Are any of the chunks (`run/chunk_xx.fa` files) empty? Does it...

Hi @14zac2 - thanks for following up. Do I understand correctly that you had to remove `Parent=gene` descriptor after running `gff_longest_transcripts.rb` script? I think this is something the script should...