xiekunwhy

Dear Osamu, Thank you very much, I will try Ver2.4.12 and feadback results. Best, Kun

Hi Osamu, In fact, there is another problem according to above table, the single CDS gene number of spaln results is larger than expected even when the input protein sequences...

Hi all, You may want to try kmerDedup (https://github.com/xiekunwhy/kmerDedup) if you are assembling pooled sample (and get larger assembly size than expected) and/or want to select longest contig sets from...

Hi, Have you solved this problem? I got these errors when using greenhill (https://github.com/ShunOuchi/GreenHill/issues/19), after consuming a lot of memory, minimap2 (2.26-r1175) stop with these error warnings [M::mm_idx_gen::48.487*1.61] collected minimizers...

Hi @yipal , The software worked well after using --optical-distance=-1. The read length I am using is 150bp, but I got 5' alignment distance(150) exceeds padding(143) when using default value...

Hi @yipal Finally, doppelmark told me that the largest value is 219 (2nd line in metrics file) # bio-mark-duplicates # maximum 5' alignment distance: 219 I really don't know why,...

Also hoping that SwiftOrtho can be installed from conda.

经常出现这个问题，但是好像不影响文件的完整性

Hi @harish0201 , I have tried to use minia to assemble this genome, but I got a very very very very fragmented results, the genome size generated from minia is...

Echoing comments above for ./. missing genotype format. Many commonly used downstream filters expect this format.