xiekunwhy

Hi, Same error occured when I use dammit 1.2. Best, Kun

same here, @ctrapnell

Hi @pengbo233 , Would you please share your experience about how to use diamond instead of blastx in proteinmask, it very usefull for speed up RepeatMasker, I think. Best, Kun

Hi, I got the same errors, and two agp files are attached, would you please take a look at? [agpfile.zip](https://github.com/malonge/RagTag/files/6857061/agpfile.zip) Best, Kun

I met the same error too, when doing self mapping, the size of genome is 850M. /minimap2 -t 4 -x asm5 -o Bch.Bch.paf Bch.genome.fa Bch.genome.fa minimap2 v2.26-r1175 Best, Kun

Hi, is @ChenJuiYANG right? @lh3

found answer here https://github.com/lh3/bwa#4gb

我也遇到了这个问题，有人解答一下吗

Dear Osamu, Thank you for your reply, and I will try -XQ option to see what happen. Best regards, Kun

Hi Osamu, How to find IntronPrm.maxl file? I want to edit 99% to a smaller value, some intron length is still abnormal. Here are some statistics about mRNA and intron...