xiekunwhy

Dear Osamu, The results are exactly what I want, thank you very much. And I still have some other questions to trouble you. 1) gffread found that some coordinates are...

Hi, Any progress? Best, Kun

Hi @chutter , I got the same error, and I don't understand how did you solve the problem, would you please explain more clearly? Best, Kun

Hi, Here are command lines and logs [HapHic.zip](https://github.com/zengxiaofei/HapHiC/files/13462972/HapHic.zip) Best, Kun

Hi, Xiaofei the perfomance is much better than default when adding --skip_allhic parameter, here is haphic sort --skip_allhic results heatmap (group5 is butterfly miss-connected?),  the errors between group1 and...

Here is the agp file (haphic sort --skip_allhic) [scaffolds.agp.zip](https://github.com/zengxiaofei/HapHiC/files/13463125/scaffolds.agp.zip)

Hi, Xiaofei Glad to hear that and hope new version comming soon. Thank you for your suggestions, I will try it. Best, Kun

Hi, Xiaofei Just a suggestion. Would you please don't change contig names in final agp file when running pipeline with `--correct_nrounds (>0)` options, use original coordinates is more convenience to...

Hi Xiaofei, Thank you very much, I will try it. Best, Kun

Hi, sklearn in https://github.com/zengxiaofei/HapHiC/blob/main/conda_env/create_conda_env_py310.sh means scikit-learn, right? I got error log when I want to re-install a newer version. The errors like following ``` pip3 install -i https://pypi.tuna.tsinghua.edu.cn/simple/ sklearn Looking...