Wolfgang Maier
Wolfgang Maier
the manual says this about `-C`: `Cost for a non-canonical GT-AG splicing (effective with --splice) [0]` but what is a "non-canonical GT-AG splicing"? Is it meant to say `non-canonical (non-GT-AG)...
Currently, the main page states this under Results for Genomics: ``` These lists are updated daily. There are 397 sites showing intra-host variation across 33 samples (with frequencies between 5%...
This change allows arbitrary characters as tool input without compromising safety against malicious text. The added test revealed a bug in the existing tests, which only tested against default settings....
- The tool would previously behave unexpectedly with empty columns at the end of lines (drop columns, retain lines that should be skipped, etc) - The input datatype is now...
A couple of adjustments to reflect interface and tool changes.
FOR CONTRIBUTOR: * [x] - I have read the [CONTRIBUTING.md](https://github.com/galaxyproject/tools-iuc/blob/master/CONTRIBUTING.md) document and this tool is appropriate for the tools-iuc repo. * [ ] - License permits unrestricted use (educational +...
I've observed in several cases that changing the region (`-r` option of smatools mpileup) in which a pileup is generated affects the depth reported at a fixed position. One example...
`gemini burden` ignores its `--min-aaf` and `--max-aaf` options when `--nonsynonymous` is in use. Unless this is the intended behavior, this seems straightforward to fix by including the aaf comparisons in...
I'm in the process of upgrading Galaxy's GEMINI tool wrappers from v0.18.1 to 0.20.1 and our tool tests report a new failure with the new version of `gemini dump`. It...