Wolfgang Maier

I'm planning to (that's why I put it into the macro file), but not in this PR. Actually, the other tool I'd be interested in fixing soon is add_line_to_file, which...

Yes, but it seems that job execution as such is broken.

Hmm, I'm not sure this should be fixed. You're of course correct with your PHRED score maths, however, the tool lets the user set a `mean of scores` threshold. What...

@rhpvorderman I do understand your point and appreciate your work here. Please also try to understand my argument: as I said earlier the tool as it is calculates the geometric...

Oh, can only add iuc members here it seems, hmm.

Now that you're a member we could finally merge this @pvanheus if you agree, of course.

Cool. Have been working for a new release since quite a while!

@gallardoalba I will do an in-depth review next week. SnpEff is a complicated beast, but thanks for starting this.

This should be dependent on the locale settings of the machine the code is running on, but that, of course, doesn't help. I'll try fixing it in the wrapper until...

On second thought: it's not too difficult to fix the encoding issue on the Python side, but you'd need to be able also to specify the column name in the...