Wolfgang Maier

Interesting! ... and good to know about the protocol. The problem is, however, that this will worsen accuracy of the WF in the common ARTIC primer case. A length of...

Hmm, I need to think about this and discuss it with a few people. I do understand that a higher upper threshold leads to better coverage, but I'm less sure...

Would it make sense to just auto-label such outputs with the input param name?

ok, I went through the list of datatypes and here's a (hopefully) complete list of stuff that's still duplicated (including the one's from Chris' initial list that I could verify):...

Related blog post of Heng Li on the issue with the human genome: https://lh3.github.io/2017/11/13/which-human-reference-genome-to-use. So maybe we could even optimize hg19 a bit?

@bgruening is moving snpfreqplot (an already installed tool) possible this way? If yes that's nice, if not I don't care much. Once virheat is tested and fully functional, we will...

The `run_variation.sh` script does not seem to do anything - it does not even check its previous invocation's status. This means the script found a `bot-downloading` tag on one of...

A downstream workflow run (consensus, reporting, etc.) has failed. Can I just run the WF manually again? It's better to trigger a rerun of the whole analysis batch! The summarize.py...

Maybe of interest: my latest iteration of the chromosomal regions problem in the GEMINI query tool (see on eu: https://usegalaxy.eu/root?tool_id=toolshed.g2.bx.psu.edu/repos/iuc/gemini_query/gemini_query/0.20.1). The `Region Filter` there breaks down the complex free text...

In particular, you can define start and end to be integer parameters so invalid input will be detected before job submission. You can also omit start and/or end, but not...