Will Rowe
Will Rowe
Hi Leonardos This is great feedback - thank you! As you have spotted, I did no curation when I merged those databases. This would definitely be something to re-visit. The...
Hi there. Thanks for your interest in GROOT! GROOT doesn't have a way to do that built in, but maybe you could do some bash scripting to combine the reports?...
Good suggestion. So as to not break HULK by changing the default smash matrix, I will look into adding a --mashFormat option or similar.
Sorry - and yes, I will add a STDOUT option
Sorry for the delay in getting back to you here. I'm trying to find the time to get back to working on this project. 1. Paired end info isn't handled...
Hi @XiaomingXu1995 - you are right that only unique minimizers are added to a sketch for a read. It would be a good idea to take into account minimizer frequency,...
Hi Jianshu, I'm afraid that I'm pushed for time at the moment and am unlikely to get to this anytime soon. Will
Hi. I'm also experiencing this issue. I don't have much more to add to the described issue - I was just wondering if there is a workaround?
Sorry for the delay answering. You can provide a concatenated file of both R1 and R2 reads but GROOT won't use the pairing information - this could be a feature...
Hi. Can you open the downloaded file? Sounds like a corrupted download; this error is telling you that the downloaded file isn't what is expected.