Will Rowe

At the moment the graph is essentially in GFA format anyway as GROOT converts the input MSA to GFA before indexing, but it then serialises it with MessagePack. Could just...

At the moment, the minimizer package collects minimizers but doesn't retain minimizer ordering from the sequence they were derived. This is because I am using a set implementation based on...

The minimizer algorithm is fairly simple at the moment. If using HULK with long reads, it is probably a good idea to compress the homopolymer runs when collecting minimizers.

There are a lot of conversion between ints (uint64/32/8 and ints) etc. This is unnecessary and makes the code harder to follow. I'll work on reducing these

Hi. Firstly, thanks for the great software! I use it regularly and have made a bioconda recipe for metacherchant so that it can integrate more easily with my workflows. I...