FlowKit
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whitews
A Python toolkit for flow cytometry analysis supporting GatingML and FlowJo workspaces
Replace 'root' with None for specifying gates at the root level. This makes the gate path tuples one item shorter and eliminates the issue of using the reserved word 'root'...
**Describe the bug** When custom gates are childs of group gates attached to sample, the parent gate of custom gate cannot be founded and exception is thrown during wsp import....
Create a new SampleCollection class for performing basic pre-processing operations on multiple samples. This would basically mirror the API of the Sample class but for multiple samples. It would be...
Hi @whitews, of all the cytometry libs available, I appreciate how straightforward and friendly yours is. Do you support handling multiple datasets in FlowKit? I know that other projects (fcs/CytoFlow)...
I am unable to pull the FCS3.0 version of the dataset embedded in BC LMD files - sometimes called 'dataset 2'. I would like to be able to select the...
Create a FAQ document. Questions to include: * Why was FlowKit developed? * Why doesn't FlowKit have a Graphical User Interface? * Why do my FlowJo results differ from FlowKit?
Implement tagging for Sample class for use with the new SampleCollection class. A Sample should be able to have multiple tags for filtering and retrieving groups of samples. Should tags...
This would remove both the matplotlib and seaborn dependencies. Bokeh is also faster and allows for interactivity.
**Is your feature request related to a problem? Please describe.** FlowKit does not appear to use the matrix-inverted-already flag in GatingML **Describe the solution you'd like** It would be nice...
Hi, I would create a new fcs file from a pandas dataframe. Is there a way, using flowkit, to write metadata in this new fcs file? Thanks in advance
