WeiZhou

[ERROR] Cannot specify both gene file and set file

1

Hi, everyone. I have an error "[ERROR] Cannot specify both gene file and set file" when doing setbased analysis. my set file is : ` phosphatases chr3:190282078-190347307` my geneFile is...

ValueError: could not convert string to float: 'start'

6

Traceback (most recent call last): File "/home/anaconda3/bin/comb-p", line 4, in __import__('pkg_resources').run_script('cpv==0.50.2', 'comb-p') File "/home/anaconda3/lib/python3.7/site-packages/pkg_resources/__init__.py", line 666, in run_script self.require(requires)[0].run_script(script_name, ns) File "/home/anaconda3/lib/python3.7/site-packages/pkg_resources/__init__.py", line 1446, in run_script exec(code, namespace, namespace) File...

Can not run ClinSV in Singularity

4

Dear Andre, I installed Singularity by root and download clinsv.sif, refdata and NA12878_v0.9.bam as suggested. Then I run the following code: ` $singularity run clinsv.sif \ -i "$input_path/*.bam" \ -ref...

error for ClinSV

9

Dear KCCG group, I installed ClinSV and it worked well when i type "Clinsv help". ``` ### This script runs ClinSV on a single node ### Version: 0.9 2019_02_13 Author:...