error for ClinSV

[weizhousjtu]

Dear KCCG group, I installed ClinSV and it worked well when i type "Clinsv help".

### This script runs ClinSV on a single node ###
Version: 0.9 2019_02_13
Author: Andre E Minoche

usage: clinsv -p /path/to/project -i /path/to/input_bams/*.bam -ref /path/to/ref_data [options]

However, it reported error when I using the following code:

Sample_path=/bak02/PubData4/MappingAndCleanUp
refdata_path=/home/RefData/reference/b37/clinsv/refdata-b37
Out_path=/home/data/WGS/CHD_Trio_WGS/CNV
${clinsv} -r all \
 -p $Out_path/project_folder \
 -i "$Sample_path/*.bam" \
 -ref $refdata_path

---

The error is :

***** error exist status != 0 (65280), please check /home/data/WGS/CHD_Trio_WGS/CNV/project_folder/alignments/Lib2570/bw/sh/bigwig.q0.Lib2570.e for more information

So I checked the 'bigwig.q0.Lib2570.e':

It shows

+ export PATH=~/software/ClinSV/clinsv/bin:    balabala~
+ wigToBigWig /home/data/WGS/CHD_Trio_WGS/CNV/project_folder/alignments/Lib2570/bw/tmp/Lib2570.q0.wig /home/RefData/reference/b37/clinsv/refdata-b37/genome/human_g1k_v37_decoy.fasta.chrom.sizes /home/data/WGS/CHD_Trio_WGS/CNV/project_folder/alignments/Lib2570/bw/Lib2570.q0.bw
/home/data/WGS/CHD_Trio_WGS/CNV/project_folder/alignments/Lib2570/bw/tmp/Lib2570.q0.wig is empty of data

So I open the file and it showed that :

fixedStep chrom=10 start=1 step=1 span=1 fixedStep chrom=11 start=1 step=1 span=1 fixedStep chrom=12 start=1 step=1 span=1 fixedStep chrom=13 start=1 step=1 span=1 fixedStep chrom=14 start=1 step=1 span=1 fixedStep chrom=15 start=1 step=1 span=1 ...........

How do I deal with this error?