Wenbin Guo

multi-thread

2

Hi, I tried this tool; it takes ~53GB for the human genome and did not finish in 24 hours (not sure when will it finish), may I ask if the...

set title in the running score figure

1

Hi, Thank you for maintaining this tool, would it be possible to enable users to set the title of the figure? For example, sometimes users would like to use GO_ID...

Dear PCAtools developer, thanks for maintaining this tool. I tried to assign a continuous variable to augment `colby` in function `biplot`, however, it looks like the color legend is discretized....

Error: kallisto index file not found kallisto_index

4

Hello, I tried to get this tool running but encounter an issue. The following are the code and error messages that I got: Code: `check_strandedness --gtf ref/Mus_musculus.GRCm38.93.gtf --transcripts ref/Mus_musculus.GRCm38.cdna.all.fa --reads_1...

max gene set size

1

Dear rGREAT developer, I am checking the local GREAT analysis function `great`, and found there is a `min_gene_set_size` option, I was wondering if we provide a `max_gene_set_size` to restrict the...

parameter explaination of GSEA function

1

Hi, I was trying to run the GSEA function and got confused with its parameters `exponent`, which is documented as `weight of each step`. ``` GSEA( geneList, exponent = 1,...

Segmentation fault in alignment

4

Dear BitmapperBS developer, I installed the latest bitmapperBS (v1.0.2.3) by git clone the source code and make (GCC version 9.4.0), the installation works well, I can see bitmapperBS and psascan...

Dear ggbreak developer, Thanks for maintaining this package. While the current implementation mainly works with continues values, I was wondering if we could support for discrete axis break. For example,...

FR: show exact p-value instead of "P<0.001" for small p-values in `stat_correlation()`, `stat_poly_eq()` and `stat_ma_eq()` and `stat_multcomp()`

11

Dear ggpmisc developer, I was wondering if we could provide a option to show the exact p-values in scientific form for the very small p-values. For example when `p=0.000000001`, it's...

Hi, I was wondering if we could add a feature to color category and gene's label differently? Currently only the node's color is supported (see example code from the package),...