clusterProfiler
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parameter explaination of GSEA function
Hi,
I was trying to run the GSEA function and got confused with its parameters exponent
, which is documented as weight of each step
.
GSEA(
geneList,
exponent = 1,
minGSSize = 10,
maxGSSize = 500,
eps = 1e-10,
pvalueCutoff = 0.05,
pAdjustMethod = "BH",
TERM2GENE,
TERM2NAME = NA,
verbose = TRUE,
seed = FALSE,
by = "fgsea",
...
)
may I ask if the exponent is the weight assigned to each gene, in that sense, the weight should have the same length as geneList (or 1, if it's a constant), is this guess correct?
Thanks!