Jakob Wasserthal comments

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                                            Jakob Wasserthal

New error on windows: RuntimeError: Encountered inf in predicted array

I just submitted a pull request.

Tractometry results: suboptimal alignment of tracts across subjects?

TractSeg is not doing any non-linear warping. However, this is also not needed. Compared to most other approaches TractSeg does not move all images to the same atlas space. Instead...

Any trained model for cardiac MR segmentation?

I am not aware of such a model.

Annotated hearts in Abdomen in public v2 dataset

Thanks for pointing out these errors. I will fix these. A release of the dataset is more complicated than a new software release unfortunately. Therefore, I can not do them...

liver_segments doesn't work

try again after upgrading to the latest version (v2.7.0)

Feature Addition: GPU Device Specification

Thanks for your suggestion. This is highly welcome. Since the device can also be cpu or mps, it would be a bit confusing to just put a number and then...

A specific part of the scapula is never segmented

This seems to be a consistent error in the ground truth annotations. We will have to correct this. Until then there is no easy fix unfortunately.

License problem

Does the error still occur? It seems like some temporary network congestion.

EOFError: Ran out of input

It might be the case that the downloaded model weights are corrupted. Try `rm -r ~/.totalseg` to remove them and run again.

Segmentations of subtasks not working - heartchambers_highres, atrial_appendage_left

Does your image contain the original HU values or were the intensity ranges modified?