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liver_segments doesn't work

Open martina99b1 opened this issue 10 months ago • 2 comments

We tried to do inference with the subtask "liver_segments", but did not work:

usage: TotalSegmentator [-h] -i filepath -o directory [-ot {nifti,dicom}] [-ml] [-nr NR_THR_RESAMP] [-ns NR_THR_SAVING] [-f] [-ff] [-t NORA_TAG] [-p] [-ta {total,body,body_mr,vertebrae_mr,lung_vessels,cerebral_bleed,hip_implant,coronary_arteries,pleural_pericard_effusion,test,appendicular_bones,appendicular_bones_mr,tissue_types,heartchambers_highres,face,vertebrae_body,total_mr,tissue_types_mr,tissue_4_types,face_mr,head_glands_cavities,head_muscles,headneck_bones_vessels,headneck_muscles,brain_structures,liver_vessels,oculomotor_muscles,thigh_shoulder_muscles,thigh_shoulder_muscles_mr,lung_nodules,kidney_cysts,breasts,ventricle_parts}] [-rs ROI_SUBSET [ROI_SUBSET ...]] [-rsr ROI_SUBSET_ROBUST [ROI_SUBSET_ROBUST ...]] [-s] [-r] [-sii] [-cp CROP_PATH] [-bs] [-fs] [-ss] [-ndm] [-v1o] [-rmb] [-d DEVICE] [-q] [-v] [-l LICENSE_NUMBER] [--test 0|1|3] [--version] TotalSegmentator: error: argument -ta/--task: invalid choice: 'liver_segments' (choose from 'total', 'body', 'body_mr', 'vertebrae_mr', 'lung_vessels', 'cerebral_bleed', 'hip_implant', 'coronary_arteries', 'pleural_pericard_effusion', 'test', 'appendicular_bones', 'appendicular_bones_mr', 'tissue_types', 'heartchambers_highres', 'face', 'vertebrae_body', 'total_mr', 'tissue_types_mr', 'tissue_4_types', 'face_mr', 'head_glands_cavities', 'head_muscles', 'headneck_bones_vessels', 'headneck_muscles', 'brain_structures', 'liver_vessels', 'oculomotor_muscles', 'thigh_shoulder_muscles', 'thigh_shoulder_muscles_mr', 'lung_nodules', 'kidney_cysts', 'breasts', 'ventricle_parts')

martina99b1 avatar Feb 18 '25 15:02 martina99b1

same here

annareithmeir avatar Feb 19 '25 12:02 annareithmeir

try again after upgrading to the latest version (v2.7.0)

wasserth avatar Feb 19 '25 13:02 wasserth