Jakob Wasserthal
Jakob Wasserthal
Sometimes the zenodo server is very slow. Can you try again on another day or from another network. Maybe your network is blocking zenodo.
If you install TotalSegmentator and the command `TotalSegmentator` is available, then the command `totalseg_set_license` should also be available.
If you do not use TotalSegmentator from the command line but within 3d Slicer via the TotalSegmentator extension, then you have to set the license number within the TotalSegmentator Slicer...
You are using a old totalsegmentator version. You have to update to a recent version.
The docker file contains the parameter files. This is one of the reasons for the large size of the docker container. It also contains the config.json file. If you want...
That's a good question. I do not have a direct answer. I will have to check myself on a dataset.
In theory that should be possible. The nnU-Net weights of TotalSegmentator can be found in the github release section. Use these for finetuning. The documentation of nnU-Net v2 contains instructions...
What happens if you open a python terminal and run `import tempfile` ?
This is true. In this case you generate all the heartchambers and then simply delete the ones you do not want.
Does the "total" task work? (`-ta total`)