TotalSegmentator
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wasserth
Tool for robust segmentation of 104 important anatomical structures in CT images
Hi, I was curious if it would be possible to have access to the patient and scanning metadata associated with each provided CT Nifti file. These would be attributes such...
I'm running TotalSegmentator on my M3Max chip (16-core CPU 40-core GPU) Macbook Pro and it's taking over 600 seconds to fully segment a 3D CT image of size 512*512*54, whereas...
When I attempt to use TotalSegmentation to segment my own CT data, I encounter an error: RuntimeError: Could not find a dataset with the ID 300. Make sure the requested...
Two questions : - What should be done to adapt the TS to MRI scans in stead of CT ? - Could you add subcortical structures (thalamus, caudate, putamen, pallidum,...
Hi there, I'm not sure if this is the best forum to add this but I would like to run segmentation on a linux server and review the files in...
The example in documentation results in an error with `TotalSegmentator==2.1.0` ```py import nibabel as nib from totalsegmentator.python_api import totalsegmentator if __name__ == "__main__": # option 2: provide input and output...
Hi, Do you know why most of the label of totalsegmentator dataset is null? Do you have other source to download this dataset?
Hi! When installing Totalsegmentator in a fresh virtual environment via pip, it installs nnunetv2 v2.3. When running totalsegmentator I get an error stating that the downloaded weights do not fit...
The output is blank. Nothing segmented for task = "heartchambers_highres". Input file is a .nii.gz file. I used this file as an input to nnU-Net code and it worked. But...
