Vicente Yepez

Hi, thanks for using FRASER through DROP. Great that you were able to set up your analysis using control samples. Regarding the cutoffs we suggest the following: * padust =...

if the strand is set to no, the split read counting of the aberrant splicing module tries to infer the strand of each read using the `BSgenome` package. On my...

Hi @gdeoli, were you able to check this?

great to hear that Laurenz! I'll close the issue once you confirm us that the module ran through.

Dear Laurenz, I don't understand :) At first, you mention that the current run is finished, but then that it didn't run through. 72h should be enough to run the...

Hi Sara, Unfortunately, the aberrant splicing module of DROP is not intended to compare between the splicing of 2 different groups. We focus on detecting aberrant spliced junctions in one...

Hi, can you please let us know: which DROP version are you using which rule are you trying to execute which dataset are you using (the demo?)

Hi, it seems that out of 56 samples, only 11 need to be counted, which means 45 were previously counted. I see the following message: ``` The params used to...

Hi Sathya. Can you please check that the row names of the following 2 files are `identical`? `PATH/Output_GTEX/processed_data/aberrant_expression/v38/counts/COV032_20_37_PAX.Rds` `PATH/Input/GTEX_External.tsv`

Yes, it means that the annotation files used to generate the GTEx count matrix is different than the one you are using to count your own samples. Did you generate...