Vicente Yepez

Hi Florentine, Can you please give us more details on your error? In which step is it failing? Also, if I understand correctly, you only have 57 samples x 49...

Hi Flo, I think the problem is that, probably due to the low number of samples and/or genes, there were no significant results. Can you try setting up the padjcutoff...

Actually, we had already fixed this in the `dev` branch. So also installing the dev branch and rerunning the module should solve your problem

Super weird. Did you try with all the samples but modifying the cut-offs to include all the significant events?

The filter parameter shouldn't have any effect in the cut-offs. Can you further lower the deltaPsiCutoff to 0?

can you try the following? ``` library(FRASER) fds

then, can you please follow step by step the 08_extract_results_FraseR script in an R session? For that, first you will need to load the snakemake object by executing: `snakemake

Hi Flo, sorry this got lost after the holidays. Was it resolved? If not, can you please check that all is good with the GenomicRanges of res_junc_dt? e.g. all junctions...

many thanks! we're fixing this and let you know once it's done

Hi @genetikzentrum, were you able to check this?