Vince Buffalo
Vince Buffalo
Yea, that makes sense. I think an exception would be a good way to handle it, though for reference, this is a GVCF right out of GATK's GenotypeGVCFs. I think...
Hi All, So I've been working on implementing a few coalescence rate estimators for my own work and ran across this nice count-based estimator by @nspope. I have many samples...
This is something I was wondering as well — I think there is a strong case that coalescent rate estimators should not be put in tskit, but perhaps a few...
Yea that looks like a very clean API @nspope! I do think if there were to be a coalescent rate implementation, the pairwise approach is the best (rather than say...
Yes, exactly — perhaps a [weighted median](https://en.wikipedia.org/wiki/Weighted_median) too, but that's a bit less common.
Excellent, thank you Aaron!
Could you send me the command you're using?
It's very likely an issue with the way it downloaded. It seems to work for me with: ``` $ wget http://raw.githubusercontent.com/vsbuffalo/bds-files/master/chapter-13-out-of-memory/gwascat.db $ sqlite3 ./gwascat.db SQLite version 3.8.5 2014-08-15 22:37:57 Enter...
I coincidentally needed a weighted average in `bedtools map` today and thought I'd check on the status of this feature. Is there an ETA for this feature? No worries if...
Thanks Ben! This looks super nice!