Vince Buffalo
Vince Buffalo
Awesome, thanks @cauliyang!
Hi Daniel, Thanks for reporting this — I'll take a look. I think you had emailed me regarding this earlier; my sincerest apologies for my delayed response (I've been slammed...
Daniel, Please see @kdmurray91's comments — he is correct, this is _not_ a bug. Your match is 29 bases long, `-M` is 35bp.
Hi @emmaggie — the issue appears to be in linking zlib. Have other applications that need zlib compiled alright on your system? For example, can you compile [https://github.com/lh3/seqtk](seqtk)? We had...
Sean, If it's not an issue if proprietary adapters, could you email me an example of your adapters? I am planning on adding multireading to scythe, but I think I...
Nik at the Bioinformatics Core played around with this. I believe his verdict was the bottleneck was predominantly I/O and the overhead of parallelization lead to an overall slower result,...
Thanks @lmmx — I will review and pull this in when I get a chance. I'm still a bit swamped at the moment but it should be soon.
I think you might have warnings converted to errors in your `~/.Rprofile` — it does create a warning for me, but installs fine. Maybe try `options(warn=0)` and let me know...
Can you try ``` $ R --vanilla > devtools::install_github("vsbuffalo/msr") ```
Me too! I really like this idea. In the Unix tradition, I think the best approach to an implementation might be a C or C++ library and command line tool...