Vince Carey

Thank you for this very interesting submission. I am concerned that the building of the vignette seems to take a very long time. I have seen  and this approach...

11 days have passed, please indicate your intentions with this package. Thank you

@LiNk-NY -- any thoughts about GISTIC for COAD? Missing rownames?

Thanks for doing this. Before I plunge in, it seems to me you have library(curatedTCGAData) in your vignette but it is not declared as Suggests in the DESCRIPTION. Can you...

Apropos the examples, you can use `if (interactive())` in some cases to reduce time spent in testing examples. For MCMC, does the sample generation per se need to be tested?...

Thanks for all your hard work. I am still seeing issues as I try to build this package: ``` * creating vignettes ... ERROR --- re-building ‘IntOMICS_vignette.Rmd’ using rmarkdown Quitting...

I have been unable to test the package but I think the problem is a broken cache on my end. So I have declared pre-check passed and the SPB and...

```' Do you really want all these in Suggests: Packages suggested but not available: 'BioPlex', 'bodymapRat', 'CLLmethylation', 'CopyNeutralIMA', 'covr', 'curatedAdipoArray', 'curatedAdipoChIP', 'curatedMetagenomicData', 'curatedTCGAData', 'DuoClustering2018', 'easierData', 'emtdata', 'FieldEffectCrc', 'GSE103322', 'GSE13015', 'GSE62944',...

It's a nice package but I am somewhat concerned about the arbitrary nature of the resource that it is built on. "Keywords", not an ontology, not clear what kind of...

on a mac that can install just about anything: ``` * installing *source* package 'ccImpute' ... ** using staged installation ** libs g++ -std=gnu++11 -I"/Users/vincentcarey/R-dev-dist/lib/R/include" -DNDEBUG -I'/Users/vincentcarey/R-dev-dist/lib/R/library/Rcpp/include' -I'/Users/vincentcarey/R-dev-dist/lib/R/library/RcppArmadillo/include' -I/usr/local/include -fPIC...