Vince Carey

Your github action for R CMD check is failing on mac and windows ...? Is it ready for submission from the portability perspective?

Now I see that the reason for failure in github actions is due to lack of R 4.2 on those platforms.

Is this really necessary when using/checking the package: ``` * building 'rd4_0.99.0.tar.gz' 1/11 packages newly attached/loaded, see sessionInfo() for details. * installing to library '/home/stvjc/R-4-2-bc316-dist/lib/R/library' * installing *source* package 'rd4'...

That's great @jwokaty . Can we also see if rextendr from CRAN will install? I will continue working on this submission, it is not ready to go into build system...

The vignette needs work. See http://contributions.bioconductor.org/important-bioconductor-package-development-features.html?q=vignette#bioc-vignette

Just a note to confirm that I see the same compilation process, but I did not have any downloads on my installation attempt. Perhaps a cache is checked. Apropos libc...

Your package uses no Bioconductor infrastructure. Please examine what is available for microbiome analysis, understand the approach to binding metadata and data together in structures like SummarizedExperiment, and let us...

Your package uses no Bioconductor infrastructure. Please examine what is available for microbiome analysis, understand the approach to binding metadata and data together in structures like SummarizedExperiment, and let us...

Thank you for this submission. The involvement of Bioconductor infrastructure packages in Bioconductor components is something we generally expect from packages in the ecosystem. A quick view of your README...

Thanks for your submission. CSV files should not be in vignettes folder. Convert to /data elements or use inst/extdata or some similar approach. Also ``` Quitting from lines 188-198 (Run_VSClust_Workflow.Rmd)...