Veit Schwämmle

@vjcitn Thank you for the fast revision! I now removed the csv files. The last chunk of the vignette is now not executed. It depends on a web service (DAVID)...

Hi @ococrook THanks for the reminder. Something went wrong with pushing the changes. I will keep on trying.

This is indeed a tricky one. They are all relevant methods, particularly with the recent rise of machine learning. But, as you say, they are not telling _what_ e.g. an...

Given the rather low number of tools in bio.tools with this format(s), I also would opt for keeping a more general format as implemented in this PR

Makes sense. Can you give an example for usage of the term deconvolution in other fields? The definition of the term is strongly related to spectra for now. Therefore, one...

Hi @LucieLamothe Good point, let's do that!

Thank you @lshep I would prefer to keep docker file and bioconda files to avoid having to simultaneously maintain multiple branches. I moved everything to the _inst_ folder. Would that...

You generally need to provide your email address and name to download the software which makes it tricky to provide maxquant as a download link. Making it available through the...

Thanks a lot for taking care of this. And good luck :-)!

Same problem for different PeptideShaker version (e.g. 2.0.15 and 2.0.30) and OpenJDK java versions 11.0.9.1-internal and 1.8.0_292. I got this problem initially in the latest conda packages of PeptideShaker and...