Vic

add support for vertical karyograms

1

Would it be possible to add support for vertical karyograms? e.g. to support lots of tracks next to a chromosome region

add labels to top x% markers in a manhattan plot?

1

Is it possible to add labels to say, the top 10 or top 5% scoring markers in a manhattan plot?

multiple highlight colors in manhattanplot?

1

I'm highlighing a region in a manhattanplot as follows. ``` sarm1

when the pvalues for a manhattan plot contain a zero or very small (e.g 1e-50) values, ymax goes to infinity, resulting in a straight line of points. Maybe you could...

deleting an organism fails in 2.4.1

1

I want to delete an organism from my 2.4.1 installation through the interface. In my web console I see a: uncaught exception: java.lang.IllegalArgumentException: empty argument I've also tried to use...

group alias description for multiple alleles

8

I'm trying to find differing alleles in a proband with multiple unaffected siblings My alias file looks as follows: ``` #proband sibling s1 s2,s3,s4 ``` with my group expression as...

After finally succcesfully compiling EPACTS using G++, GCC 5 on Ubuntu 18.04 I run into the problem of plots not being generated. I tried running test_run_epacts.sh. All files are being...

Feat uri scheme

1

added notebook_scheme kwarg to jbrowse_config.set_env to enable https support instead of hardcoded http scheme in make_url_colab_jupyter in tracks.py

**Is your feature request related to a problem? Please describe.** A clear and concise description of what the problem is. Ex. I'm always frustrated when [...] when creating a jbrowse...

jupyter notebook example?

1

Could you create a jupyter notebook example?