deepcell-tf
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vanvalenlab
Deep Learning Library for Single Cell Analysis
Dear all, First of all, thanks for the wonderful work you are doing with DeepCell. I would like to know if it is possible to convert tracks from Trackmate or...
**Describe the bug** The newly released TissueNet 1.1 dataset has strange values for each image channel, which is neither scaled from 0 to 1 nor is it scaled from 0...
**Describe the bug** When installing the deepcell using the pip, the wheel of deepcell-toolbox cannot be built. **To Reproduce** Steps to reproduce the behavior: 1. Enter 'pip install deepcell' 2....
**Describe the bug** Inconsistent segmentation results between https://deepcell.org/predict and code implementation. **To Reproduce** Steps to reproduce the behavior: Use the below image as input to https://deepcell.org/predict, with settings and in...
**Describe the bug** when running the notebook on your data (not changing a single line of code), encountering the following error: ValueError: numpy.ndarray size changed, may indicate binary incompatibility. Expected...
Hello, I have HE histopathology slides from head and neck cancer and I would like to perform nuclei segmentation on the slides. I would like to ask you, can I...
**Describe the bug** My GPU system only supports an older version of tensorflow. In my case, tensorflow=2.4.1. I am trying to use the image generator features of deepcell. However, I...
Are "fgbg" and "outer-distance" not used in the current "deep_watershed"?
**Describe the bug** I was using Mesmer (through ark-analysis repository) roughly two months ago to segment my images and I was super happy with the results. This week, when I...
**Describe the bug** Last week, on Tuesday, using the file `Composite.tif` in the attached archive (I had to attach an archive as github does not support .tif files), I used...
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Deep Learning Library for Single Cell Analysis